Daniel Fischer

Senior Scientist
  • Phone number +358295326670
  • Email address daniel.fischer@luke.fi
  • Address Tietotie 4 31600 JOKIOINEN

Response of primary mammary epithelial cells to pathogen challenge in dairy cows with divergent genomic breeding values for udder health

Refereed scientific publications
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2025

Empowering bioinformatics communities with Nextflow and nf-core

Refereed scientific publications
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2025

The genome assembly of the farmed European whitefish Coregonus lavaretus L. from the Finnish selective breeding programme

Refereed scientific publications
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2025

Genetic architecture and genomic prediction for yield, winter damage, and digestibility traits in timothy (Phleum pratense L.) using genotyping-by-sequencing data

Refereed scientific publications
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2025

Fine-tuning GBS data with comparison of reference and mock genome approaches for advancing genomic selection in less studied farmed species

Refereed scientific publications
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2025

Book review: An Introduction to R and Python for Data Analysis: A Side‐by‐Side ApproachTaylorR. Brown Chapman and Hall/CRC, 2023, 246 pages (hardback $99.95, ebook $74.96) ISBN 978‐10322032‐56

Other publications
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2024

eQTL-Detect: nextflow-based pipeline for eQTL detection in modular format with sharable and parallelizable scripts

Refereed scientific publications
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2024

Multi‐model GWAS reveals key loci for horticultural traits in reconstructed garden strawberry

Refereed scientific publications
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2024

Genes and pathways revealed by whole transcriptome analysis of milk derived bovine mammary epithelial cells after Escherichia coli challenge

Refereed scientific publications
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2024

Genomic selection for survival under naturally occurring Saprolegnia oomycete infection in farmed European whitefish Coregonus lavaretus

Refereed scientific publications
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2023

Rumen Microbiota Predicts Feed Efficiency of Primiparous Nordic Red Dairy Cows

Refereed scientific publications
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2023

Human Adult Astrocyte Extracellular Vesicle Transcriptomics Study Identifies Specific RNAs Which Are Preferentially Secreted as EV Luminal Cargo

Refereed scientific publications
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2023

Genomewide transcriptome profiling of milk derived primary bovine mammary epithelial cells after pathogen challenge

Refereed scientific publications
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2022

Accuracy of genomic prediction of dry matter intake in Dutch Holsteins using sequence variants from meta-analyses

Refereed scientific publications
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2022

An Analysis of David E. Tyler’s Publication and Coauthor Network

Refereed scientific publications
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2022

Population Genomics with R , , Chapman & Hall/CRC, 2020, 394 pages, $120, hardback ISBN: 978-1-1386-0818-4

Other publications
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2022

Characterization of nucleic acids from extracellular vesicle-enriched human sweat

Refereed scientific publications
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2021

On linear dimension reduction based on diagonalization of scatter matrices for bioinformatics downstream analyses

Refereed scientific publications
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2020

Computing the Oja Median in R: The Package OjaNP

Refereed scientific publications
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2020

Performing QTL and eQTL Analyses with the R-Package GenomicTools

Other publications
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2020

Data Science with Julia, Paul D. McNicholas and Peter A. Tait, CRC Press, 2019, 220 pages, £37.59, paperback, ISBN: 978‐1‐138‐49998‐0

Other publications
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2019

REPPlab: An R package for detecting clusters and outliers using exploratory projection pursuit

Refereed scientific publications
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2019

The effect of CAPN1 and CAST gene variations on meat quality traits in Finnish Aberdeen Angus and Nordic Red Cattle populations

Refereed scientific publications
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2018

Correspondence Analysis–Theory, Practice and New Strategies : Eric J. Beh and Rosaria Lombardo, Wiley Series in Probability and Statistics, 2014, 592 pages, 82.20EUR, hardcover, ISBN: 978‐1‐119‐95324‐1

Other publications
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2018